PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3065_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 602aa    MW: 65850.8 Da    PI: 4.7543
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3065_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12431476454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  RrC3065_p2 431 NHVEAERQRREKLNQRFYSLRAVVPNV-----SKMDKASLLGDAISYINEL 476
                 799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-5363259IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.282427476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-18430501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.37E-14430481No hitNo description
Gene3DG3DSA:4.10.280.107.9E-19431497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-10431476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-16433482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006952Biological Processdefense response
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MSSTDVQVTD HHLNQSTNGT NLWSTTEDDA SVMEPFIGSE HSSLWPQPPL TPPPPPHVTE  60
DTLQQRLQAL IEGARETWTY AVFWQLSHGF AGEEDSTTTA ALLSWGDGYY KGEEEERKKR  120
KPSNPVSAAE QEHRKRVIRE LNSLISGGGG GTVSGSSSDE AGDEDVTDAE WFFLVSMTQS  180
FFANDGSGLP GRAFSNSQTI WLSGANALAG SSCERARQGQ VYGLETMVCV PTENGVVELG  240
SLEVIHQSSD LVDKVNGFFS FNGGGGGESG SWALFNLNPD QGENDPATTW INEPDVTGIE  300
PVLGVNTGNN NNSTSSNSDS QTASKLCNGS SVEHPKQQQQ QQNPQISSSG FVEGGDSKKR  360
KRCLVSDKEE EMLSFTSVLP LPTKTNDSDH SDLEASVAKG RESGGRTVVE PEKKPRKRGR  420
KPANGREEPL NHVEAERQRR EKLNQRFYSL RAVVPNVSKM DKASLLGDAI SYINELKAKL  480
EKAESDKEEL QKKIDGMSQE VASGNVKSSV KDQKCVDQDP GVSVEVEIDV KIIGWDAMIR  540
IQCDKKNHPG AKFMEALREL ELEVNHASLS VVNEFMIQQA TVKMGNQFFT QDKLKAALME  600
RV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A4e-81252558227Transcription factor MYC3
4ywc_A4e-81252558227Transcription factor MYC3
4ywc_B4e-81252558227Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1412420KKPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00086PBMTransfer from AT4G17880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834920.0AC183492.1 Brassica oleracea Contig G, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013723448.10.0PREDICTED: transcription factor MYC4
SwissprotO496870.0MYC4_ARATH; Transcription factor MYC4
TrEMBLA0A078I3920.0A0A078I392_BRANA; BnaC01g10420D protein
STRINGAT4G17880.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12652896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.10.0bHLH family protein